مقایسه ژنتیکی ماهی سفید دریای خزر (Kamenskii, 1901) Rutilus frisii kutum در رودخانه‌های گرگانرود و چشمه‌کیله (تنکابن) با استفاده از نشانگرهای ریزماهواره

نوع مقاله : مقاله پژوهشی

نویسندگان

1 کارشناس ارشد گروه شیلات، دانشگاه علوم کشاورزی و منابع طبیعی گرگان، ایران

2 استادیار گروه شیلات، دانشگاه علوم کشاورزی و منابع طبیعی گرگان، ایران

3 دانشجوی دکتری شیلات، دانشگاه علوم کشاورزی و منابع طبیعی گرگان، ایران

چکیده

ساختار ژنتیکی ماهی سفید سواحل جنوبی دریای خزر، با استفاده از نشانگر ریزماهواره بررسی گردید. تعداد 50 قطعه ماهی در بهار 85، از رودخانه‌های گرگانرود (استان گلستان) و چشمه کیله (استان مازندران) صید شدند. از ده جایگاه ژنی ریزماهواره‌ای، (Ca1, Ca3, CypG3, CypG24, CypG27, CypG30, Lid1, Rru2, Rru4, Z21908) در این بررسی استفاده شدند که هر ده جایگاه ژنی چند‌شکلی نشان دادند. میانگین تعداد الل در سطح جمعیت‌ها 95/7 بود که پایین‌تر از مقدار مشاهده شده در ماهیان رودکوچ است. هر دو جمعیت علایمی از بروز تنگنای ژنتیکی نشان دادند. مقدار هتروزیگوسیتی مشاهده شده در گرگانرود 80/0 و در چشمه کیله 74/0 به دست آمد. از میان 20 تست جایگاه ژنی- جمعیت در 11 تست انحراف معنی‌داری از تعادل هاردی - واینبرگ مشاهده شد. نتایج به دست آمده از Fst (008/0) و Rst (04/0) تمایز ژنتیکی پایینی را میان مناطق نشان داد. همچنین، بر اساس آنالیز واریانس مولکولی، تنها 4 درصد تنوع مشاهده شده مربوط به بین جمعیت‌هاست. میزان فاصله ژنتیکی میان مناطق نیز 03/0 به دست آمد. به نظر می-رسد مدیریت نامناسب برنامه بازسازی ذخایر ماهی سفید تأثیراتی منفی بر روی ساختار ژنتیکی این گونه گذاشته است.

کلیدواژه‌ها

موضوعات


عنوان مقاله [English]

Genetic comparison of Caspian Sea Rutilus frisii kutum (Kamenskii, 1901) in Gorganroud and Cheshmekile (Tonekabon) rivers using microsatellite markers

نویسندگان [English]

  • Mohammad Rezaei 1
  • Ali Shabani 2
  • Bahare Shabanpour 2
  • Hadis Kashiri 3
1 Gorgan University of Agriculture Science and Natural Resources, Iran
2 Gorgan University of Agriculture Science and Natural Resources, Iran
3 Gorgan University of Agriculture Science and Natural Resources, Iran
چکیده [English]

The population structure of Rutilus frisii kutum in southern coasts of Caspian Sea was investigated using microsatellite loci. 50 Kutum fish samples were collected from Gorganroud (Golestan province) and Cheshmekile (Mazandaran province) rivers in April 2006. All the 10 loci investigated in this study (Ca1, Ca3, CypG3, CypG24, CypG27, CypG30, Lid1, Rru2, Rru4, Z21908) were polymorphic. The mean number of alleles at the population level was 7.95 which is lower than the reported values for anadromous fishes. Both populations showed signs of bottleneck. The mean value of observed heterozygosity was 0.80 for Gorganroud and 0.74 for Cheshmekile, respectively. Among the 20 tests of population-loci, 11 samples showed significant deviation from Hardy-Weinberg equilibrium. Results from Fst (0.008) and Rst (0.04) values showed low genetic differentiation among the populations, also, AMOVA analysis indicated only 4% genetic diversity between populations. The values of genetic distance was 0.03 among the regions. It seems that mismanagement of kutum’restocking programs has had negative effects on the genetic structure of this species.

کلیدواژه‌ها [English]

  • Genetic Diversity
  • Caspian Sea
  • Microsatellite
  • Genetic Structure
  • Rutilus frisii kutum
شاهی­فر، ر. (1373) گزارش نهایی پروژه پلاک گذاری ماهی سفید در دریای مازندران. سازمان تحقیقات و آموزش شیلات ایران، گزارش تحقیقاتی مرکز تحقیقات شیلات استان گیلان.
ولی‌پور، آ. و خانی‌پور، ع. آ. (1388) ماهی سفید جواهر دریای خزر. انتشارات مرکز تحقیقات شیلات، تهران.
Allendorf, F., Ryman, N. and Utter, F. (1987) Genetics and fishery management: past, present and future. In: Population genetics and fishery management (eds. Ryman, N. and Utter, F.) 64-67. Washington Sea Grant Publication/University of Washington press, Seattle.
Allendorf, F. W. (1986) Genetic drift and the loss of alleles versus heterozygosity. Zoological Biology 5: 181-190.
Baerwald, M. R. and May, B. (2004) Characterization of microsatellite loci for five members of the minnow family Cyprinidae found in the Sacramento-San Joaquin Delta and its tributaries. Molecular Ecology 4: 385-390.
Balloux, F. and Lugon-Moulin, N. (2002) The estimate of population differentiation with microsatellite markers. Molecular Ecology 11: 155-165.
Barinova, A., Yadrenkina, E., Nakajima, M. and Taniguchi, N. (2004) Identification and characterization of microsatellite DNA markers developed in ide Leuciscus idus and Siberian roach Rutilus rutilus. Molecular Ecology Notes 4: 86-88.
Bassam, B. J., Caetano-Anolles, G. and Gresshoff, G. M. (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Analytical biochemistry 84: 680-683.
Bataillon, T. M., David, J. L. and Schoen, D. J. (1996) Neutral genetic markers and conservation: simulated germplasm collections. Genetics 144: 409-417.
Blanchet, S., Paez, D., Bernatchez, L. and Dodson, J. (2008) An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): Implications for supportive breeding programs. Biological Conservation 141: 1989-1999.
Chen, L., Li, Q. and Yang, J. (2008) Microsatellite genetic variation in wild and hatchery populations of the sea cucumber (Apostichopus Japonicus Selenka) from northern China. Aquaculture Research 39: 1541-1549.
Coad, B. W. (2000) Criteria for assessing the conservation status of taxa (as applied to Iranian freshwater fishes). Biologia Bratislava 55: 539-557.
Cornuet, J. M. and Luikart, G. (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
Dewoody, J. A. and Avise, J. C. (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish biology 56: 461-473.
Dimsoski, P., Toth, G. P. and Bagley, M. J. (2000) Microsatellite characterization in central stoneroller Campostoma anomalum (Pisces: Cyprinidae). Molecular Ecology 9: 2155-2234.
Fiumera, A. C., Wu, L., Parket, P. G. and Fuetst, P. A. (1999) Effective population size in the captive breeding program of the Lake Victoria cichlid Paralabidocbromis cbilotes. Zoo Biology 18: 886-892.
Frankham, R. (2008) Genetic adaptation to captivity in species conservation programs. Molecular Ecology 17: 325-333.
Goudet, J. (2001) Fstat, a program to Estimate and Test Gene Diversities and Fixation Indices (version 2.9.3). Retrieved from http://www2.unil.ch/popgen/softwares/fstat.htm. On: 17 June 2008.
Grassi, F., Imazio, S., Gomarasca, S., Citterio, S., Aina, R., Sgorbati, S., Sala, F., Patrignani, G. and Labra, M. (2004) Population structure and genetic variation within Valeriana wallrothii Kreyer in relation to different ecological locations. Plant Science 166: 1437-1441.
Hakansson, J. and Jensen, P. (2005) Behavioural and morphological variation between captive populations of red junglefowl (Gallus gallus) possible implications for conservation. Biological Conservation 122: 431–439.
Hamilton, P. B. and Tyler, C. R. (2008) Identification of microsatellite loci for parentage analysis in roach Rutilus rutilus and eight other cyprinidae fish by cross-species amplification and a novel test for detecting hybrids between roach and other cyprinids. Molecular Ecology Resources 8: 462-465.
Hillis, D. M., Mable, B. K., Larson, A., Davis, S. K. and Zimmer, E. A. (1996) Nucleic Acids IV: sequencing and cloning. In: Molecular Systematics (eds. Hillis, D. M., Moritz, C. and Mable, B. K.) 321-384. Sinauer Associates, Sunderland.
IUCN (2006) IUCN Red List of Threatened species. Retrieved from http://www.redlist.org/. On 18 May 2007.
Kitada, S., Shishidou, H., Sugaya, T., Kitakado, T., Hamasaki, K. and Kishino, H. (2009) Genetic effects of long-term stock enhancement program. Aquaculture 290: 69-79.
Koljonen, M. L., Tahtinen, J., Saias, M. and Koskiniemi, J. (2002) Maintenance of genetic diversity of Atlantic salmon (salmo salar) by captive breeding programmes and the geographic distribution of microsatellite variation. Aquaculture 212: 69-92.
Li, J., Wang, G. and Bai, Z. (2009) Genetic variability in four wild and two farmed stocks of the Chinese freshwater pearl mussel (Hyriopsis cumingii) estimated by microsatellite DNA markers. Aquaculture 287: 286-291.
Li, Q., Xu, K. and Yu, R. (2007)Genetic variation in Chinensis hatchery populations of the Japanese scallop (Patinopecten yessoensis) inferred from microsatellite data. Aquaculture 296: 211-219.
Liu, F., Xia, J. H., Bai, Z. H., Fu, J. J., Li, J. L. and Yue, G. H. (2009) High genetic diversity and substantial population differentiation in grass carp (Ctenopharyngodon idella) revealed by microsatellite analysis. Aquaculture 297: 51-56.
Machado-schiaffino, G., Depico, E. and Garcia-vazquez, E. (2007) Genetic variation losses in Atlantic salmon stocks created for supportive breeding. Aquaculture 264: 59-65.
Millennium Ecosystem Assessment. (2005) Ecosystems and human well-being: Current state and trends: Findings of the conditions and trends working group of the millennium ecosystem assessment. Island Press, Washington D.C.
Nei M. (1978) Estimation of average heterozygosity and genetic distance from small number of individuals. Genetics 89: 583-590.
Oosterhout, C. V., Hutchinson, W. F., Wills, D. P. M. and Shipley, P. (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4: 535-538.
Paykan Heyrati, F., Mostafavi, H., Toloee, H. and Dorafshan, S. (2007) Induced spawning of kutum, Rutilus frisii kutum (Kamenskii, 1901) using (D-Ala6, Pro9-NEt) GnRHa combined with domperidone. Aquaculture 265: 288-293.
Peakall, R. and Smouse, P. E. (2006) Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6: 288-295.
Petit, R. J., Mousadik, A. E. and Pons, A. O. (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology 12: 844-855.
Pinera, J. A., Blanco, G., Vázquez, E. and Sánchez, J. A. (2007) Genetic diversity of blackspot seabream (Pagellus bogaraveo) populations off Spanish Coasts: a preliminary study. Marin Biology 151: 2153-2158.
Pujolar, J. M., Deleo, G. A., Ciccotti, E. and Zane, L. (2009) Genetic composition of Atlantic and Mediterranean recruits of European eel Anguilla anguilla based on EST-linked microsatellite loci. Journal of Fish Biology 74: 2034-2046.
Raymond, M. and Rousset, F. (2003) Genepop 3.4., an updated version of Genepop v.1.2 (1995): population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249.
Rice, W. R. (1989) Analyzing tables of statistical tests. Evolution 43: 223-225.
Thorpe, J. P. (1982) The molecular clock hypothesis: biochemical evolution, genetic differentiation and systematic. Annual Review of Ecology and Systematics 13: 139-168.
Tiedemann, R, Hardy, O., Vekemans, X. and Milinkovitch. M. C. (2000) Higher impact of female than male migration on population structure in large mammals. Molecular Ecology 9: 1159-1163.
Valipour, A. and Khanipour, A. A. (2007) Cultivation of autumn form Rutilus frisii kutum. Book of abstracts, Conference of warm water Aquaculture and biologic productivity of basisns of arid climate. International symposium, Astrakhan, Russia, p 183.
Wright, S. (1978) Evolution and the genetics of populations: variability within and among natural populations. University of Chicago Press, Chicago.
Xu, Z., Primavera, J. H., De la Pena, L. D., Pettit, P., Belak, J. and Warren, A. A. (2001) Genetic diversity of wild and cultured black tiger shrimp (Penaeus monodon) in the Philippines using microsatellites. Aquaculture 199: 13- 40.
Zar, J. H. (1999) Biostatistical analysis. 4th ed., Prentice Hall, New Jersey.